PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022759-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 296aa    MW: 32102.4 Da    PI: 6.2994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022759-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-2975133259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ ++itY  eHnh+
  NNU_022759-RA  75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTRLVITYACEHNHP 133
                    69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.58269135IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-3069135IPR003657WRKY domain
SuperFamilySSF1182902.88E-2572135IPR003657WRKY domain
SMARTSM007741.4E-3374134IPR003657WRKY domain
PfamPF031061.8E-2476133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEGRFSNPFV GEQVGVRITP KSGGESPFSG VISEGKVTST SSPKRSRRSV QKRVVSVPIK  60
DVDGSRLKGE GAPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRVDPT  120
RLVITYACEH NHPWPASRNS NSTASHSNTT ATTSATRPAV VSPANGSSSP PSTTTENDIS  180
PKFPPEEPVV FSDRPAMEPD DSKFGDLGEE SMITSDDFSW FSDVPSTSPA VLESTTYPGS  240
SSGRADVAMI FQMREEDESL FADLGELPEC SLVFRRGIFE QDEESRRCSP VCGSTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A1e-17761361978Probable WRKY transcription factor 4
1wj2_A1e-17761361978Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833334e-39HG983333.1 Humulus lupulus mRNA for WRKY transcription factor (Wrky3 gene), clone 3323.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242109.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP565e-74WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLD7TJP41e-107D7TJP4_VITVI; Putative uncharacterized protein
STRINGVIT_10s0003g01600.t011e-106(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-61WRKY DNA-binding protein 65